So instead, I used
@max1zzz's
IIcx reloaded board file to trace out where they go, and sure enough, there it is in the Bomarc schematics. It's hooked up to pins 5, 6, and 7 of UH6 (VIA2).
View attachment 82030
These pins are also known as PA3, PA4, and PA5 of VIA2 and also go to pins on the GLU chip. Luckily, Guide to the Macintosh Family Hardware 2nd edition tells us what they are. They are interrupt request lines for expansion slots $C, $D, and $E.
View attachment 82032
And more useful info from the same book...
View attachment 82033
So after all that, I can say that it looks like they are the IRQ lines for the three other NuBus slots that aren't available on the IIcx, since the NuBus slots it actually has are $9, $A, and $B.