If you set up the SCSI2SD any way you like (
for example like this) and connect it up to the SE/30. Then, the FloppyEMU should work to emulate regular floppy disks even with the stock SE/30 ROM (just not HD20 images). Because of this, you can make a floppy disk image with System 6.0.8 and the HD20 System Extension.
Boot from the
FloppyEMU System 6 + HD20 floppy image.
On the
SCSI2SD Disk, move the Finder into the Extensions folder in the System Folder. Rename the System Folder to "System Folder 2".
Copy the FloppyEMU "System Folder" on to the SCSI2SD disk. To make sure it is "blessed" confirm it has the picture of a mac on the System Folder you just copied. If it doesn't, open the System Folder, move the Finder to the desktop, then move it back to the System Folder. If it still doesn't try using System Picker if it is there.
Shutdown.
Set up the FloppyEMU with your HD20 image.
Start up the computer. It should Boot from the System 6 you put on the SE/30, and show your old disk image on the desktop.
Copy everything you want over, except the System Folder. Once everything else is copied, move the SCSI2SD System Folder to the Trash, Copy over the FloppyEMU System Folder, make sure the System Folder you copied over is blessed (move the Finder out and back into the System Folder).
Restart.
You should now be booting from your moved over System and have all your files from your FloppyEMU.