I figured out the tweak necessary for the ROM to correctly operate with FPU-optional mode, allowing for LC cpus or full CPUs with the FPU disabled in software. This allows me to run quite a bit more now as we aren't crashing the second something goes for floating point code. Hard to say anything on stability as this 060 is marginal at 64mhz, but freezes are very infrequent and of unclear cause. I'd sooner attribute it to the CPU.
Fun fact, the 060 would sometimes fail to boot at room temperature at 66.66mhz. Resetting would not change anything, a full power cycle would be required to try again. It gets worse with cooling: a peltier would always prevent it from booting.
I did some quick tracing with the ISP last night and the ISP is hit to a surprising degree - even on mouse movement, which I found interesting. There are several big issues that need to be resolved still; several routines are messing with the bus error handler which would be needed to run with branch prediction on safely. No progress on why memory is somewhat slower, except I found that my 040 numbers were coming from a Quadra 605 rom not a 650 which uses the tighter Quadra 800 memory timings. Still seems to be a bit of a gap compared to the 040 but not as bad.
Marathon works, and gets a nice improvement.
Speedometer is a crap benchmark for measuring anything faster than a 68030 as almost all of its tests are tiny and fit in CPU caches. So it is of limited use to measure overall system performance. Nevertheless, here's a screenshot of a comparison at 32mhz. Note that KWhet and Math tests hit SANE so the disabled FPU on the 060 will influence those.
I have done some quick software testing with all the software I had on my SE/30 disk image.
Again I am in no way suggesting this is usable, but surprisingly I didn't find anything that failed. The below is what I tested and it all seems to launch and work at least in very cursory testing.
Clarisworks 4, Photoshop 3, Stuffit Deluxe 5.5, BBEdit, JPEGView, Symantec C 7, Softwindows, Resedit, MPW
A-Train, Beyond Dark Castle, Dark Castle, Civlization, Cosmic Osmo, Crystal Quest, F/A-18 Hornet, Flight simulator 4
Hellcats, Indiana Jones 3, Lemmings, Maelstrom 1.4, Oregon trail, Pax Imperia 1.5, Prince of Persia, Railroad tycoon
SimAnt, SimCity 1.4, SimCity2000, Test drive 2, Tetris, Abuse, Escape velocity I, Marathon, Out of this world
SimTower, Slick Willie 3, The incredible machine 3, Doom, Warcraft, Wolfenstein