Ok guys this is what I have tried.
I loaded system 6.0.1 and then went to the floppy II emu and selected Music Studio 2.0.
I ejected the system floppy and then popped in a blank one and initialized/erased it.
I dragged the Music2.0 disk to the blank disk and copied it all over.
But the thing is, it didn't work because when I try to boot from the floppy then it just gives me a blank white screen and plays the startup sound over and over again. If I boot from the image on the floppy emu then it works fine.
Is there an application specifically for copying disks byte by byte? I tried to load up Copy II plus but for some reason it was not able to even catalog the Music Studio 2.0 image loaded from the floppy ii emu.