most peopel here say go for the G5 seems you are in the minority
Frankly that bothers me about as much as Britney Spear's latest haircut. I've been in a minority all my life!
I'm basing my assignations on experience, and reading real benchmarks, not Apple propaganda.
I looked into the same argument extensively when I was looking to replace the iMac with a tower system, and also for a friend who wanted a cheap, fast Mac.
It surprised the hell outta me that the single 1.6 and 1.8GHz G5 towers were outgunned by a dual 1.25GHz G4, but then I thought about it and actually it's not that surprising. FWIW a single G5 reaches parity with Apple's fastest G4 dual CPU machines about 2.0GHz, and that is mostly only for single task work. For multithreaded tasks and many-application environments then the more CPUs you have is all the better, as you have more units to spread the demand for CPU cycles over.
UNIX process management in general, including that used in OS X, is very good at freeing up single CPU cores to execute a new foreground app in my experience, shifting existing background tasks off to other cores to the best of it's ability. The Mac Pro is agreat demonstration of that. With sufficient RAM it is able to open heavyweight Apps like Aperture without much fuss even when doing CPU heavy work that is already using half or maybe even 3/4 of avaiable cycles.
OK this is not going to be as pronounced on a Dual G4 PowerMac but the fact remains that performance will be greater with Dual CPUs over a single CPU that is of the equal power of the two lesser CPUs combined.
For the record, due to the improved architecture and superior raw CPU and Altivec power, any *Dual* CPU G5 tower will far outgun the G4 Dual at anything, but that's pretty much a given.
Oh and another good thing to remember is don't blow your whole budget on getting something with an Uber CPU and not leave room for RAM in there. Don't be afraid to get a slightly lesser machine with plenty of RAM (read a gig or so) or budget to add RAM to what you are buying. It ALWAYS helps.
The only PowerMac G4s with FW800 (and Airport Extreme) were OS X bootable only...
Ah I forgot about that, yeah sorry. It always seemed a little dumb to me including FW800 (which almost no-one apart from Pros and people with too much money use) and not including USB 2.0 but I guess you can ram a PCI card in the machine if you need USB 2.0 - but it's not bootable that way.