Really, the neck board is no issue. As others have stated, removal and insertion, as long as done with some care, is not an issue at all. It is made to go on and off. As far as the analog board, first, it probably is a voltage issue/digital components not getting "clean" power/correct voltage for moving ones. Second, you cannot properly diagnose it without the analog board recap and ruling out the caps as the cause. Unlike the surface mount electrolytics on the logic board, unless the large ones on the analog board are really bad, they tend to not show any leakage, and not even bulge even though bad.