Ok, think you have got something.
As SM14 is the master clock, and is lost, the Laser won't do anything.
U26 (74LS04) is a logic inverter, out of the 14 pins, where 7 is Ground and 14 is VCC (5 volts) the other pins are inverters ( 6 pair )
So if you input a Low signal at one pin, the output will be High, and the other way round...
https://electronzap.com/7404-ic-hex-inverter-not-gate-74hc04-74ls04/
I will not jumper or bypass anything for safety reasons, the chip is probably fried and cheap anyway, so you can cut legs of the old one to help the process of chip removal.
Concerning the nearby chip U13, if you have a look at Appendix D-7 concerning the external drive (this chip is related to drive failure)
As you had issues at the beginning with the external drive, this chip is probably bad as well and may had cause the failure of U26.
So i will replace both chips as a matter of fact, U13 is 74HCT244
Concerning the last question, you can probably tweak the crystal afterwards using VC1 (see your picture above) to the correct value.